Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17325Hypothetical protein. (157 aa)    
Predicted Functional Partners:
ISM_17315
Patatin; COG3621 Patatin.
 
     0.951
ISM_17320
Hypothetical protein.
 
     0.951
ISM_17310
Hypothetical protein.
 
     0.916
ISM_17300
Hypothetical protein; COG1855 ATPase (PilT family).
 
     0.878
ISM_17305
COG1396 Predicted transcriptional regulators.
 
     0.877
ISM_17760
Hypothetical protein.
  
     0.488
ISM_10745
COG3137 Putative salt-induced outer membrane protein.
  
     0.474
ISM_17295
Hypothetical protein.
  
     0.442
ISM_17475
COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
  
     0.428
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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