Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_17360TraF protein; COG0840 Methyl-accepting chemotaxis protein. (270 aa)    
Predicted Functional Partners:
ISM_17355
COG3736 Type IV secretory pathway, component VirB8.
 
     0.956
ISM_01200
COG1868 Flagellar motor switch protein.
  
 
 0.954
ISM_17345
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
 
     0.954
ISM_17350
Conjugal transfer protein, trbG; COG3504 Type IV secretory pathway, VirB9 components.
 
     0.953
ISM_17365
Hypothetical protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
    0.951
ISM_17340
Type IV secretion system protein B11, putative; COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
    0.938
ISM_17375
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
     0.934
ISM_17380
COG3702 Type IV secretory pathway, VirB3 components.
 
     0.932
ISM_17385
Hypothetical protein; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters.
 
     0.930
ISM_05855
Possible FlgD protein; Required for flagellar hook formation. May act as a scaffolding protein.
  
  
 0.894
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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