Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_17385Hypothetical protein; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters. (97 aa)    
Predicted Functional Partners:
ISM_17375
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
 
 0.988
ISM_17380
COG3702 Type IV secretory pathway, VirB3 components.
 
   
 0.975
ISM_17345
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
 
  
 0.961
ISM_17350
Conjugal transfer protein, trbG; COG3504 Type IV secretory pathway, VirB9 components.
 
  
 0.960
ISM_17340
Type IV secretion system protein B11, putative; COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
  
 0.946
ISM_17355
COG3736 Type IV secretory pathway, component VirB8.
 
   
 0.937
ISM_17360
TraF protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.930
ISM_17395
Hypothetical protein.
 
     0.929
ISM_17365
Hypothetical protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
   
 0.908
ISM_17390
Transglycosylase SLT domain protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
   
 0.866
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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