STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17450Hypothetical protein; COG2132 Putative multicopper oxidases. (384 aa)    
Predicted Functional Partners:
ISM_04145
Copper-binding protein, plastocyanin/azurin family protein; COG4454 Uncharacterized copper-binding protein.
 
 
 0.895
ISM_17445
Hypothetical protein; COG4454 Uncharacterized copper-binding protein.
 
   
 0.883
ISM_17455
COG1538 Outer membrane protein.
 
   
 0.871
ISM_07730
Azu1 pseudoazurin (blue copper protein); COG3794 Plastocyanin.
   
 0.812
ISM_10091
Trypsin; COG5640 Secreted trypsin-like serine protease.
    
 0.790
ISM_04160
COG3667 Uncharacterized protein involved in copper resistance.
  
  
 0.698
tatC
Twin-arginine translocation system protein, TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.684
tatB
Twin-arginine translocation protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
    
 
 0.674
ISM_00035
Hypothetical protein; COG0457 FOG: TPR repeat.
     
 0.603
tatA
Twin-arginine translocation protein, TatA/E family protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.571
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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