STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17490Thiol:disulfide interchange protein, hypothetical; COG0526 Thiol-disulfide isomerase and thioredoxins. (170 aa)    
Predicted Functional Partners:
ISM_17495
Thiol:disulfide interchange protein DsbE; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
     0.917
ISM_17500
Probable c-type cytochrome; COG2010 Cytochrome c, mono- and diheme variants.
   
   0.845
ISM_17465
COG0785 Cytochrome c biogenesis protein.
  
 0.830
ISM_17485
Hypothetical protein.
 
     0.787
ISM_17475
COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
 
   
 0.724
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.713
ISM_16980
COG0785 Cytochrome c biogenesis protein.
  
 0.642
ISM_10466
Sulfur oxidation V protein; COG0785 Cytochrome c biogenesis protein.
  
 0.614
ISM_14885
Xanthine dehydrogenase family protein, small/large subunits; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
     
 0.588
ISM_09185
Thiol-specific antioxidant protein; COG0450 Peroxiredoxin.
  
 
 0.579
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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