Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17600COG3336 Predicted membrane protein. (333 aa)    
Predicted Functional Partners:
ISM_17595
COG2366 Protein related to penicillin acylase.
 
     0.943
ISM_17590
Hypothetical protein.
 
     0.841
lnt-2
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
     0.837
lspA-2
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
     0.776
ISM_17565
COG0739 Membrane proteins related to metalloendopeptidases.
 
     0.660
ISM_17575
Hypothetical protein; COG0428 Predicted divalent heavy-metal cations transporter.
       0.619
ISM_17560
SCO1/2 family protein; COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
 
   
 0.613
ISM_17570
COG3019 Predicted metal-binding protein.
       0.590
ISM_17555
COG2847 Uncharacterized protein conserved in bacteria.
 
     0.570
ISM_16765
Hypothetical protein; COG0367 Asparagine synthase (glutamine-hydrolyzing).
  
     0.561
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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