STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17615Probable metal-transporting P-type ATPase; COG2217 Cation transport ATPase. (737 aa)    
Predicted Functional Partners:
ISM_17460
Heavy metal transport/detoxification protein; COG2608 Copper chaperone.
 
 
 0.959
ISM_17440
COG2217 Cation transport ATPase.
 
   
 0.737
ISM_17610
COG3809 Uncharacterized protein conserved in bacteria.
 
     0.676
ISM_17620
Hypothetical protein.
 
     0.507
ISM_17735
Hypothetical protein.
  
     0.460
ISM_17740
Hypothetical protein.
  
     0.443
ISM_17550
dsbA-like thioredoxin domain protein; COG1651 Protein-disulfide isomerase.
 
 
   0.432
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.