STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17620Hypothetical protein. (99 aa)    
Predicted Functional Partners:
ISM_17625
COG1376 Uncharacterized protein conserved in bacteria.
  
     0.760
ISM_10181
COG1376 Uncharacterized protein conserved in bacteria.
  
     0.748
lnt-2
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
  
     0.568
ISM_17610
COG3809 Uncharacterized protein conserved in bacteria.
 
     0.520
ISM_17615
Probable metal-transporting P-type ATPase; COG2217 Cation transport ATPase.
 
     0.507
ISM_17525
Hypothetical protein; COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
  
     0.497
ISM_17565
COG0739 Membrane proteins related to metalloendopeptidases.
  
     0.492
ISM_04165
COG0642 Signal transduction histidine kinase.
  
     0.437
ISM_17695
Replication initiator RepC.
  
     0.423
ISM_17530
Putative RND efflux system protein; COG1230 Co/Zn/Cd efflux system component.
  
     0.422
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.