STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17660Hypothetical protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component. (201 aa)    
Predicted Functional Partners:
ISM_17695
Replication initiator RepC.
  
    0.731
ISM_17415
Hypothetical protein.
  
     0.667
ISM_17745
htrA suppressor protein sohA, putative; COG2002 Regulators of stationary/sporulation gene expression.
  
     0.659
ISM_17670
TonB-dependent receptor protein; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
     0.637
ISM_17750
Hypothetical protein.
  
     0.627
ISM_17685
RepA partitioning protein/ATPase, ParA type; COG1192 ATPases involved in chromosome partitioning.
  
     0.588
ISM_17690
Rep B partitioning protein/ParB-like protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
     0.570
ISM_17720
Hypothetical protein.
  
     0.553
ISM_17710
Hypothetical protein.
  
     0.547
ISM_17665
Hypothetical protein.
       0.498
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.