Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ISM_17695Replication initiator RepC. (411 aa)    
Predicted Functional Partners:
ISM_17690
Rep B partitioning protein/ParB-like protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
 
   
 0.909
ISM_17685
RepA partitioning protein/ATPase, ParA type; COG1192 ATPases involved in chromosome partitioning.
 
   
 0.905
ISM_17660
Hypothetical protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component.
  
    0.731
ISM_17645
Hypothetical protein.
  
    0.707
ISM_17680
SpoVT/AbrB-like cell growth regulatory protein; COG2336 Growth regulator.
 
     0.611
ISM_17675
Hypothetical memebrane protein; COG5573 Predicted nucleic-acid-binding protein, contains PIN domain.
 
     0.568
ISM_17710
Hypothetical protein.
  
     0.456
ISM_17415
Hypothetical protein.
  
     0.436
ISM_17745
htrA suppressor protein sohA, putative; COG2002 Regulators of stationary/sporulation gene expression.
  
   
 0.436
ISM_17730
ParB-like nuclease; COG1475 Predicted transcriptional regulators.
 
   
 0.429
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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