STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17725Hypothetical protein. (114 aa)    
Predicted Functional Partners:
ISM_17730
ParB-like nuclease; COG1475 Predicted transcriptional regulators.
 
     0.887
ISM_17720
Hypothetical protein.
 
     0.884
ISM_17710
Hypothetical protein.
 
     0.859
ISM_17735
Hypothetical protein.
 
     0.852
ISM_17740
Hypothetical protein.
 
     0.849
ISM_17715
COG4227 Antirestriction protein.
 
     0.843
ISM_17775
Hypothetical protein.
  
     0.760
ISM_17810
Hypothetical protein.
  
     0.719
ISM_17770
Hypothetical protein.
  
     0.704
ISM_17755
Hypothetical protein.
  
     0.697
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.