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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17730ParB-like nuclease; COG1475 Predicted transcriptional regulators. (660 aa)    
Predicted Functional Partners:
ISM_17735
Hypothetical protein.
 
     0.904
ISM_17740
Hypothetical protein.
 
     0.901
ISM_17725
Hypothetical protein.
 
     0.887
ISM_17685
RepA partitioning protein/ATPase, ParA type; COG1192 ATPases involved in chromosome partitioning.
 
 
 0.855
ISM_17720
Hypothetical protein.
 
     0.829
ISM_17715
COG4227 Antirestriction protein.
 
     0.828
ISM_17710
Hypothetical protein.
 
     0.826
ISM_17755
Hypothetical protein.
 
     0.784
ISM_06720
COG1192 ATPases involved in chromosome partitioning.
  
 
 0.783
ISM_08465
Hypothetical protein; COG1192 ATPases involved in chromosome partitioning.
  
 
 0.783
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.