Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17730ParB-like nuclease; COG1475 Predicted transcriptional regulators. (660 aa)    
Predicted Functional Partners:
ISM_17735
Hypothetical protein.
 
     0.902
ISM_17740
Hypothetical protein.
 
     0.902
ISM_17725
Hypothetical protein.
 
     0.883
ISM_17685
RepA partitioning protein/ATPase, ParA type; COG1192 ATPases involved in chromosome partitioning.
 
 
 0.843
ISM_17715
COG4227 Antirestriction protein.
 
     0.830
ISM_17720
Hypothetical protein.
 
     0.829
ISM_17710
Hypothetical protein.
 
     0.826
ISM_17755
Hypothetical protein.
 
     0.783
ISM_17800
Hypothetical protein; COG2875 Precorrin-4 methylase.
 
     0.774
ISM_17775
Hypothetical protein.
 
     0.773
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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