close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17815Hypothetical protein. (197 aa)    
Predicted Functional Partners:
ISM_17820
T-DNA border endonuclease; COG3843 Type IV secretory pathway, VirD2 components (relaxase).
 
     0.959
ISM_17825
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.950
ISM_17330
Hypothetical protein; COG3704 Type IV secretory pathway, VirB6 components.
  
     0.774
ISM_17360
TraF protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.773
ISM_17385
Hypothetical protein; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters.
  
     0.773
ISM_17380
COG3702 Type IV secretory pathway, VirB3 components.
  
     0.772
ISM_17810
Hypothetical protein.
  
     0.768
ISM_17355
COG3736 Type IV secretory pathway, component VirB8.
  
     0.766
ISM_17395
Hypothetical protein.
  
     0.764
ISM_17375
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
  
     0.762
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.