Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17835Hypothetical protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component. (246 aa)    
Predicted Functional Partners:
ISM_17830
Hypothetical protein; COG0531 Amino acid transporters.
 
    0.899
ISM_14925
Hypothetical protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.679
ISM_10286
Hypothetical protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.636
ISM_02935
Transporter; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.580
ISM_02930
TRAP transporter solute receptor, TAXI family protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
  
     0.524
ISM_00900
Hypothetical protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.501
ISM_12515
TRAP transporter, 4TM/12TM fusion protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.432
ISM_14920
Hypothetical protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
  
     0.409
ISM_08200
Putative membrane protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.405
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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