STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A306_00000415Uncharacterized protein. (288 aa)    
Predicted Functional Partners:
VCL
Vinculin.
   
 0.981
TLN1
FERM domain-containing protein.
 
     0.945
ITGB5
Integrin beta.
   
 0.863
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.842
ITGB2
Integrin beta.
   
 0.794
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.792
ITGB8
Integrin beta; Belongs to the integrin beta chain family.
   
 0.779
APBB1IP
Amyloid beta (A4) protein-binding, family B, member 1 interacting protein.
    
 0.742
PXN
Paxillin, transcript variant X1; Belongs to the paxillin family.
    
 0.729
PIP5K1C
Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma, transcript variant X1.
    
 0.710
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.