STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF2Stromal cell-derived factor 2. (165 aa)    
Predicted Functional Partners:
RNF13
Ring finger protein 13.
 
      0.657
DNAJB11
DnaJ (Hsp40) homolog, subfamily B, member 11.
   
 
 0.655
DNAJC10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
 
 0.601
CALR3
Calreticulin.
   
 
 0.539
HSP90B1
Heat shock protein 90kDa beta (Grp94), member 1.
   
 
 0.537
A306_00013182
KIAA0100 ortholog.
 
      0.506
DAG1
Dystroglycan 1 (Dystrophin-associated glycoprotein 1).
    
 0.499
A306_00004346
Dystroglycan-like.
    
 0.499
CRELD2
Cysteine-rich with EGF-like domains 2.
   
 
 0.485
DDOST
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]
   
 
 0.429
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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