STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAPGEFL1Rap guanine nucleotide exchange factor (GEF)-like 1. (500 aa)    
Predicted Functional Partners:
A306_00015291
Rap guanine nucleotide exchange factor 3.
 
      0.900
RAPGEF5
Rap guanine nucleotide exchange factor (GEF) 5.
  
 
 
0.593
CASC3
Cancer susceptibility candidate 3.
 
      0.559
OGFOD3
2-oxoglutarate and iron-dependent oxygenase domain containing 3.
      
 0.540
SERAC1
Serine active site containing 1.
      
 0.535
PLCE1
Phospholipase C, epsilon 1.
   
  
 0.526
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 
 0.476
RRAD
Ras-related associated with diabetes.
    
 0.460
DIRAS3
DIRAS family, GTP-binding RAS-like 3.
    
 0.433
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.