STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCC1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1. (1030 aa)    
Predicted Functional Partners:
SMARCE1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E, member 1.
    
 0.966
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.960
ACTL6A
Actin-like 6A; Belongs to the actin family.
    
 0.935
A306_00014580
Transcription activator BRG1-like.
   
 0.917
SMARCA2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.
   
 0.917
ARID1A
AT rich interactive domain 1A (SWI-like).
   
 0.904
ARID1B
AT rich interactive domain 1B (SWI1-like).
   
 0.904
A306_00015084
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3.
    
 0.901
A306_00015347
Protein polybromo-1-like.
   
 0.891
PBRM1
Polybromo 1.
   
 0.891
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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