STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDAC3Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (405 aa)    
Predicted Functional Partners:
ARID4A
AT rich interactive domain 4A (RBP1-like).
   
 0.955
ARID4B
AT rich interactive domain 4B (RBP1-like).
   
 0.955
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component, transcript variant X1.
   
 0.925
NCOR1
Nuclear receptor corepressor 1.
    
 0.922
NCOR2
Nuclear receptor corepressor 2.
    
 0.922
SUDS3
Uncharacterized protein.
    
 0.872
TBL1XR1
Transducin (Beta)-like 1 X-linked receptor 1, transcript variant X1.
   
 0.857
TBL1X
Transducin (Beta)-like 1X-linked, transcript variant X1.
   
 0.857
PPARG
Peroxisome proliferator-activated receptor gamma; Nuclear receptor that binds peroxisome proliferators such as hypolipidemic drugs and fatty acids. Once activated by a ligand, the nuclear receptor binds to DNA specific PPAR response elements (PPRE) and modulates the transcription of its target genes, such as acyl-CoA oxidase. It therefore controls the peroxisomal beta-oxidation pathway of fatty acids. Key regulator of adipocyte differentiation and glucose homeostasis. ARF6 acts as a key regulator of the tissue-specific adipocyte P2 (aP2) enhancer. Acts as a critical regulator of gut ho [...]
    
 0.837
RBBP4
Retinoblastoma binding protein 4.
   
 0.808
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.