PDC protein (Columba livia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PDC

Phosducin. (249 aa)

Predicted Functional Partners:

GNB5

0.860

A306_00002580

0.794

CCT7

0.743

GNB1

0.735

GNB4

0.735

GNB3

0.735

CCT5

0.679

CCT3

0.667

GNG12

0.655

CCT2

0.646

Your Current Organism:

Columba livia

NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A306_00002580	GNB1	A0A2I0MQA5	A0A2I0M2Z5	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 1.	0.928
A306_00002580	GNB3	A0A2I0MQA5	A0A2I0MLQ6	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 3.	0.888
A306_00002580	GNB4	A0A2I0MQA5	A0A2I0MBA5	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 4.	0.928
A306_00002580	GNB5	A0A2I0MQA5	A0A2I0MDM8	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta 5.	0.864
A306_00002580	GNG12	A0A2I0MQA5	A0A2I0MBU4	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.643
A306_00002580	PDC	A0A2I0MQA5	A0A2I0LRG6	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosducin.	0.794
CCT2	CCT3	A0A2I0LZL2	A0A2I0LJ84	Chaperonin containing TCP1, subunit 2 (Beta).	Chaperonin containing TCP1, subunit 3 (Gamma).	0.999
CCT2	CCT5	A0A2I0LZL2	A0A2I0MWB6	Chaperonin containing TCP1, subunit 2 (Beta).	Chaperonin containing TCP1, subunit 5 (Epsilon).	0.999
CCT2	CCT7	A0A2I0LZL2	A0A2I0MME0	Chaperonin containing TCP1, subunit 2 (Beta).	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
CCT2	GNB1	A0A2I0LZL2	A0A2I0M2Z5	Chaperonin containing TCP1, subunit 2 (Beta).	Guanine nucleotide binding protein (G protein), beta polypeptide 1.	0.598
CCT2	GNB3	A0A2I0LZL2	A0A2I0MLQ6	Chaperonin containing TCP1, subunit 2 (Beta).	Guanine nucleotide binding protein (G protein), beta polypeptide 3.	0.598
CCT2	GNB4	A0A2I0LZL2	A0A2I0MBA5	Chaperonin containing TCP1, subunit 2 (Beta).	Guanine nucleotide binding protein (G protein), beta polypeptide 4.	0.598
CCT2	GNB5	A0A2I0LZL2	A0A2I0MDM8	Chaperonin containing TCP1, subunit 2 (Beta).	Guanine nucleotide binding protein (G protein), beta 5.	0.611
CCT2	PDC	A0A2I0LZL2	A0A2I0LRG6	Chaperonin containing TCP1, subunit 2 (Beta).	Phosducin.	0.646
CCT3	CCT2	A0A2I0LJ84	A0A2I0LZL2	Chaperonin containing TCP1, subunit 3 (Gamma).	Chaperonin containing TCP1, subunit 2 (Beta).	0.999
CCT3	CCT5	A0A2I0LJ84	A0A2I0MWB6	Chaperonin containing TCP1, subunit 3 (Gamma).	Chaperonin containing TCP1, subunit 5 (Epsilon).	0.999
CCT3	CCT7	A0A2I0LJ84	A0A2I0MME0	Chaperonin containing TCP1, subunit 3 (Gamma).	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
CCT3	GNB1	A0A2I0LJ84	A0A2I0M2Z5	Chaperonin containing TCP1, subunit 3 (Gamma).	Guanine nucleotide binding protein (G protein), beta polypeptide 1.	0.528
CCT3	GNB3	A0A2I0LJ84	A0A2I0MLQ6	Chaperonin containing TCP1, subunit 3 (Gamma).	Guanine nucleotide binding protein (G protein), beta polypeptide 3.	0.528
CCT3	GNB4	A0A2I0LJ84	A0A2I0MBA5	Chaperonin containing TCP1, subunit 3 (Gamma).	Guanine nucleotide binding protein (G protein), beta polypeptide 4.	0.528