STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLEKHM1Pleckstrin homology domain containing, family M (With RUN domain) member 1. (720 aa)    
Predicted Functional Partners:
VPS39
CNH domain-containing protein.
   
 
 0.655
A306_00012973
Microtubule-associated proteins 1A/1B light chain 3C.
    
 
 0.643
MAP1LC3C
Microtubule-associated protein 1 light chain 3 gamma.
    
 
 0.643
A306_00015017
Phorbol-ester/DAG-type domain-containing protein.
 
  
   0.616
GABARAPL2
GABA(A) receptor-associated protein like 2.
    
 
 0.585
VPS11
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
    
 
 0.581
VPS18
Pep3_Vps18 domain-containing protein.
   
 
 0.560
SNAP29
Synaptosomal-associated protein, 29kDa.
      
 0.557
OSTM1
Osteopetrosis associated transmembrane protein 1.
      
 0.543
STX17
Syntaxin-17.
      
 0.543
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.