STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERGIC1Endoplasmic reticulum-golgi intermediate compartment 1. (327 aa)    
Predicted Functional Partners:
GTPBP3
GTP binding protein 3 (Mitochondrial).
  
 0.900
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.719
YARS
Tyrosine--tRNA ligase.
     
 0.665
SURF4
Surfeit 4.
   
 
 0.592
EPRS
Glutamyl-prolyl-tRNA synthetase.
  
  
 0.586
A306_00006905
Mitochondrial inner membrane protein COX18.
  
  
 0.550
LMAN1
Lectin, mannose-binding, 1.
   
  
 0.483
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
  
 0.466
GTPBP6
Putative GTP binding protein 6 (Putative).
  
  
 0.432
OAT
Ornithine aminotransferase, transcript variant X2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.429
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.