STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD4ASterile alpha motif domain containing 4A. (681 aa)    
Predicted Functional Partners:
CARHSP1
Calcium regulated heat stable protein 1, 24kDa, transcript variant X1.
    
 
 0.531
A306_00005464
Golgin subfamily A member 3.
      
 0.531
TMEM63C
Transmembrane protein 63C.
      
 0.528
RNPC3
RNA-binding region (RNP1, RRM) containing 3.
      
 0.523
CNTLN
Centlein, centrosomal protein.
      
 0.493
YWHAE
14-3-3 protein epsilon isoform X1; Belongs to the 14-3-3 family.
    
   0.472
EIF4B
Eukaryotic translation initiation factor 4B.
    
 
 0.458
WDR5
WD repeat domain 5.
    
 
 0.428
RBM38
RNA binding motif protein 38, transcript variant X1.
      
 0.404
CAPN9
Calpain 9; Belongs to the peptidase C2 family.
      
 0.403
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.