STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HPS1Hermansky-Pudlak syndrome 1. (499 aa)    
Predicted Functional Partners:
A306_00015234
4-hydroxyphenylpyruvate dioxygenase-like.
     
 0.649
HPDL
4-hydroxyphenylpyruvate dioxygenase-like.
     
 0.649
HPD
4-hydroxyphenylpyruvate dioxygenase.
     
 0.649
RAB38
RAB38, member RAS oncogene family.
     
 0.592
RAB32
RAB32, member RAS oncogene family.
     
 0.592
HPS3
Hermansky-Pudlak syndrome 3.
      
 0.555
GTF2H1
General transcription factor IIH, polypeptide 1, 62kDa.
      
 0.552
RAB29
RAB29, member RAS oncogene family.
     
 0.533
HPS6
Hermansky-Pudlak syndrome 6.
      
 0.521
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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