STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUDS3Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
ARID4B
AT rich interactive domain 4B (RBP1-like).
   
 0.986
ARID4A
AT rich interactive domain 4A (RBP1-like).
   
 0.983
ING1
Inhibitor of growth protein.
    
 
 0.940
RBBP4
Retinoblastoma binding protein 4.
    
 0.907
RBBP7
Retinoblastoma binding protein 7.
    
 0.907
SIN3B
SIN3 transcription regulator family member B.
   
 0.905
SIN3A
SIN3 transcription regulator family member A.
   
 0.905
SAP18
Sin3A-associated protein, 18kDa.
     
 0.900
HDAC3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.872
HDAC8
Histone deacetylase 8.
    
 0.870
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.