STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YOD1YOD1 deubiquitinase. (211 aa)    
Predicted Functional Partners:
PLAA
Phospholipase A2-activating protein, transcript variant X1.
    
 
 0.974
UFD1
Uncharacterized protein.
   
 
 0.971
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.943
RPS27A
Ribosomal protein S27a.
   
 
 0.911
UBE4B
Ubiquitination factor E4B.
    
 
 0.895
SPATA5L1
Spermatogenesis associated 5-like 1; Belongs to the AAA ATPase family.
   
 0.895
SPATA5
Spermatogenesis associated 5.
   
 0.895
UBE4A
Ubiquitination factor E4A.
    
 
 0.878
NSFL1C
NSFL1 (p97) cofactor (p47).
   
 
 0.865
UBXN2B
UBX domain protein 2B.
   
 
 0.862
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.