STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCO1Beta-carotene oxygenase 1. (526 aa)    
Predicted Functional Partners:
ALDH1A2
Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.
   
 
 0.922
ALDH1A3
Aldehyde dehydrogenase 1 family, member A3; Belongs to the aldehyde dehydrogenase family.
   
 
 0.922
ALDH1A1
Aldehyde dehydrogenase 1 family, member A1, transcript variant X2; Belongs to the aldehyde dehydrogenase family.
   
 
 0.922
RDH10
Retinol dehydrogenase 10 (All-trans); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.920
AOX1
Aldehyde oxidase 1.
   
 
 0.917
A306_00015066
Dehydrogenase/reductase SDR family member 4.
     
 0.915
DHRS3
Dehydrogenase/reductase (SDR family) member 3.
   
 
 0.915
A306_00002035
Retinol dehydrogenase 12-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.910
A306_00002034
Retinol dehydrogenase 12-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.910
A306_00003920
Retinol dehydrogenase 7.
     
 0.909
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.