STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3B3Splicing factor 3b, subunit 3, 130kDa. (1217 aa)    
Predicted Functional Partners:
SF3B4
Splicing factor 3b, subunit 4, 49kDa.
   
 0.999
SF3B1
Splicing factor 3b, subunit 1, 155kDa, transcript variant X3.
   
 0.999
PHF5A
PHD finger protein 5A.
   
 0.999
SF3B6
Splicing factor 3b, subunit 6, 14kDa.
    
 0.999
SF3B5
Splicing factor 3b, subunit 5, 10kDa.
   
 0.999
DDX42
DEAD (Asp-Glu-Ala-Asp) box helicase 42.
   
 0.996
SF3A2
Splicing factor 3a, subunit 2, 66kDa.
   
 0.996
SF3A3
Splicing factor 3a, subunit 3, 60kDa.
   
 0.996
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.996
SNRNP200
Small nuclear ribonucleoprotein 200kDa (U5).
   
 
 0.995
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.