STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM23Tripartite motif containing 23. (398 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
   
 0.981
ITSN2
Intersectin 2.
    
 0.892
NME8
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.824
ITSN1
Intersectin 1 (SH3 domain protein).
    
 0.802
GAK
Cyclin G associated kinase.
   
 0.711
ZFAND4
Zinc finger, AN1-type domain 4.
   
 0.692
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.690
UBE2D3
Ubiquitin-conjugating enzyme E2D 3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.686
A306_00014857
2'-5'-oligoadenylate synthase 1.
   
 0.676
BIRC6
Baculoviral IAP repeat containing 6.
   
 0.659
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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