STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF8Pre-mRNA processing factor 8. (2311 aa)    
Predicted Functional Partners:
SNRNP200
Small nuclear ribonucleoprotein 200kDa (U5).
   
 0.999
PRPF6
Pre-mRNA processing factor 6.
   
 0.998
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.998
DDX23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.
   
 0.997
SNRNP40
Small nuclear ribonucleoprotein 40kDa (U5).
   
 0.997
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.995
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.995
SNRPD2
Small nuclear ribonucleoprotein Sm D2.
   
 0.994
PRPF3
Pre-mRNA processing factor 3.
   
 0.994
PRPF4
Pre-mRNA processing factor 4.
   
 0.994
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.