STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1088 aa)    
Predicted Functional Partners:
CDC40
Cell division cycle 40.
   
 0.998
CWC25
CWC25 spliceosome-associated protein homolog.
    
 0.997
CCDC94
Coiled-coil domain containing 94.
   
 0.996
SNRNP200
Small nuclear ribonucleoprotein 200kDa (U5).
    
 
 0.992
PRPF8
Pre-mRNA processing factor 8.
   
 
 0.991
PRPF19
Uncharacterized protein.
   
 0.989
BUD31
BUD31 homolog.
    
 0.989
SLU7
SLU7 homolog, splicing factor, transcript variant X1.
   
 0.988
SYF2
SYF2 pre-mRNA-splicing factor.
    
 0.981
XAB2
XPA binding protein 2.
   
 0.974
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.