STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMED6Transmembrane p24 trafficking protein 6. (244 aa)    
Predicted Functional Partners:
GYLTL1B
Glycosyltransferase-like 1B.
      
 0.656
CEP76
Centrosomal protein 76kDa.
      
 0.643
TMED10
Transmembrane p24 trafficking protein 10.
   
 
 0.636
OSTM1
Osteopetrosis associated transmembrane protein 1.
   
  
 0.611
UFM1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.
      
 0.578
NIP7
NIP7, nucleolar pre-rRNA processing protein.
   
  
 0.571
TMED2
Transmembrane p24 trafficking protein 2, transcript variant X1.
   
 
 0.563
TRABD
TraB domain containing.
      
 0.556
QPCT
Glutaminyl-peptide cyclotransferase.
      
 0.550
TERF2
Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.
 
    
 0.542
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.