STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP20Ubiquitin carboxyl-terminal hydrolase. (786 aa)    
Predicted Functional Partners:
CCP110
Centriolar coiled coil protein 110kDa, transcript variant X1.
    
 0.668
MYSM1
Myb-like, SWIRM and MPN domains 1.
   
 
 0.653
LAP3
Leucine aminopeptidase 3.
    
 0.630
YARS
Tyrosine--tRNA ligase.
      
 0.629
ADRB2
Adrenoceptor beta 2, surface.
    
 0.608
ADRB1
Adrenoceptor beta 1.
    
 0.608
RFC5
Replication factor C (Activator 1) 5, 36.5kDa.
    
 0.560
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.555
MRPS9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.535
MRPL3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.523
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.