STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2AF1U2 small nuclear RNA auxiliary factor 1, transcript variant X1. (163 aa)    
Predicted Functional Partners:
SRSF3
Serine/arginine-rich splicing factor 3, transcript variant X1.
   
 0.842
SRSF2
Serine/arginine-rich splicing factor 2.
   
 0.827
RNPS1
RNA binding protein S1, serine-rich domain.
   
 0.760
SNRNP35
Small nuclear ribonucleoprotein 35kDa (U11/U12).
   
 0.752
A306_00014132
Serine/arginine-rich splicing factor 6.
   
 0.745
SRSF4
Serine/arginine-rich splicing factor 4.
   
 0.745
A306_00002026
Serine/arginine-rich splicing factor 5.
   
 0.745
SRSF5
Serine/arginine-rich splicing factor 5, transcript variant X2.
   
 0.745
CDC40
Cell division cycle 40.
     
 0.736
DHX38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
  0.732
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.