STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SALL4Spalt-like transcription factor 4. (1111 aa)    
Predicted Functional Partners:
A306_00010021
Homeobox protein NANOG.
   
 0.927
A306_00015239
POU domain protein.
   
 0.916
RBBP4
Retinoblastoma binding protein 4.
   
 0.743
RBBP7
Retinoblastoma binding protein 7.
   
 0.741
CRBN
Cereblon.
    
 
 0.681
ARID4B
AT rich interactive domain 4B (RBP1-like).
      
 0.663
ADAMTS18
ADAM metallopeptidase with thrombospondin type 1 motif, 18.
   
  
 0.651
GATAD2B
GATA zinc finger domain containing 2B.
    
 0.637
IRX3
Iroquois homeobox 3.
      
 0.636
USH1C
Usher syndrome 1C, transcript variant X1.
      
 0.632
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.