STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PJA2Praja ring finger 2, E3 ubiquitin protein ligase, transcript variant X1. (693 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
 0.640
RSPO1
R-spondin 1, transcript variant X1.
   
 0.634
MFHAS1
Malignant fibrous histiocytoma amplified sequence 1.
    
 0.577
FBXL17
F-box and leucine-rich repeat protein 17, transcript variant X1.
    
 
 0.551
ZFAND4
Zinc finger, AN1-type domain 4.
   
 0.545
LGR5
Leucine-rich repeat containing G protein-coupled receptor 5.
    
 0.534
LGR4
Leucine-rich repeat containing G protein-coupled receptor 4.
    
 0.534
RSPO3
R-spondin 3.
   
 0.516
TRIP12
Thyroid hormone receptor interactor 12, transcript variant X1.
   
 
 0.511
DNAJC16
DnaJ (Hsp40) homolog, subfamily C, member 16.
      
 0.477
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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