STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG7SMG7 nonsense mediated mRNA decay factor, transcript variant X2. (1164 aa)    
Predicted Functional Partners:
SMG1
SMG1 phosphatidylinositol 3-kinase-related kinase; Belongs to the PI3/PI4-kinase family.
   
 0.982
UPF1
Uncharacterized protein.
   
 0.952
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
0.912
ZGRF1
Zinc finger, GRF-type containing 1.
   
 0.881
SMG6
PINc domain-containing protein.
    
0.870
SMG8
SMG8 nonsense mediated mRNA decay factor.
     
 0.828
UPF3B
Smg4_UPF3 domain-containing protein.
   
 0.803
UPF3A
Smg4_UPF3 domain-containing protein.
   
 0.803
DCP1A
Decapping mRNA 1A.
    
 0.742
TERT
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
   
 
 0.724
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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