STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SELENOF15 kDa selenoprotein. (118 aa)    
Predicted Functional Partners:
SELENOT
Selenoprotein T; Belongs to the SelWTH family. Selenoprotein T subfamily.
   
  
 0.691
SELENOK
Selenoprotein K.
      
 0.656
VIMP
VCP-interacting membrane selenoprotein.
   
  
 0.639
A306_00015046
Putative LOC102098508.
      
 0.630
SEPN1
Selenoprotein N, 1.
      
 0.555
MSRB3
Peptide-methionine (R)-S-oxide reductase; Methionine-sulfoxide reductase that specifically reduces methionine (R)-sulfoxide back to methionine. While in many cases methionine oxidation is the result of random oxidation following oxidative stress, methionine oxidation is also a post-translational modification that takes place on specific residues.
      
 0.547
SEPHS1
Selenophosphate synthetase 1.
      
 0.540
TXNRD2
Thioredoxin reductase 2.
      
 0.536
EEFSEC
Eukaryotic elongation factor, selenocysteine-tRNA-specific.
      
 0.530
UGGT1
UDP-glucose glycoprotein glucosyltransferase 1, transcript variant X1.
    
 
 0.527
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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