STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPPC6BTrafficking protein particle complex 6B. (122 aa)    
Predicted Functional Partners:
TRAPPC2L
Trafficking protein particle complex 2-like.
   
 0.998
TRAPPC5
Trafficking protein particle complex 5.
    
 0.997
TRAPPC2
Trafficking protein particle complex 2.
   
 0.997
TRAPPC8
Trafficking protein particle complex 8.
   
 0.997
TRAPPC10
Trafficking protein particle complex 10.
    
 0.989
A306_00001189
Trafficking protein particle complex subunit 9.
   
 0.989
TRAPPC11
Trafficking protein particle complex 11.
   
 0.983
RAB1A
RAB1A, member RAS oncogene family.
    
 0.969
TRAPPC3
Trafficking protein particle complex 3.
   
 0.960
TRAPPC3L
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.960
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.