STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC85CCoiled-coil domain containing 85C. (283 aa)    
Predicted Functional Partners:
DTWD1
DTW domain containing 1, transcript variant X1.
      
 0.651
ARHGAP21
Rho GTPase activating protein 21.
    
 
 0.572
MPHOSPH10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
      
 0.556
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
      
 0.555
EBNA1BP2
EBNA1 binding protein 2.
      
 0.523
ISM2
Isthmin 2.
      
 0.509
FAM160A1
Family with sequence similarity 160, member A1.
     
 0.473
CCNK
Cyclin K, transcript variant X1; Belongs to the cyclin family.
    
 
 0.470
CCDC85A
Coiled-coil domain containing 85A.
 
    
0.465
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.