STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMBRA1Autophagy/beclin-1 regulator 1. (656 aa)    
Predicted Functional Partners:
BECN1
Beclin 1, autophagy related.
    
 0.992
ULK1
Unc-51 like autophagy activating kinase 1, transcript variant X1.
   
 0.973
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.969
ULK2
Unc-51 like autophagy activating kinase 2.
   
 0.967
PRKN
E3 ubiquitin-protein ligase parkin.
    
 0.940
PIK3R4
Phosphoinositide-3-kinase, regulatory subunit 4, transcript variant X1.
   
 
 0.863
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
   
 0.858
ATG13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
   
 0.807
ATG14
Autophagy related 14.
     
 0.797
UNC79
Uncharacterized protein.
    
 0.772
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.