ABCC4 protein (Columba livia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABCC4

ATP-binding cassette, sub-family C (CFTR/MRP), member 4. (1333 aa)

Predicted Functional Partners:

MRPS7

0.550

KATNAL2

0.520

NICN1

0.457

FCF1

0.457

GOPC

0.456

SERPINC1

0.446

RAPGEF4

0.435

KIRREL

0.434

KIRREL3

0.434

USP10

0.416

Your Current Organism:

Columba livia

NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCC4	FCF1	A0A2I0MSD9	A0A2I0MPA6	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	FCF1 rRNA-processing protein.	0.457
ABCC4	GOPC	A0A2I0MSD9	A0A2I0MVD5	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Golgi-associated PDZ and coiled-coil motif containing.	0.456
ABCC4	KATNAL2	A0A2I0MSD9	A0A2I0M0J5	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.520
ABCC4	KIRREL	A0A2I0MSD9	A0A2I0LJF9	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Kin of IRRE-like protein 1.	0.434
ABCC4	KIRREL3	A0A2I0MSD9	A0A2I0LVE3	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Uncharacterized protein.	0.434
ABCC4	MRPS7	A0A2I0MSD9	A0A2I0M7A5	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Mitochondrial ribosomal protein S7.	0.550
ABCC4	NICN1	A0A2I0MSD9	A0A2I0LW75	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Nicolin 1.	0.457
ABCC4	RAPGEF4	A0A2I0MSD9	A0A2I0MIZ1	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Rap guanine nucleotide exchange factor (GEF) 4, transcript variant X1.	0.435
ABCC4	SERPINC1	A0A2I0MSD9	A0A2I0MED6	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Serpin peptidase inhibitor, clade C (Antithrombin), member 1; Belongs to the serpin family.	0.446
ABCC4	USP10	A0A2I0MSD9	A0A2I0M094	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	Ubiquitin carboxyl-terminal hydrolase.	0.416
FCF1	ABCC4	A0A2I0MPA6	A0A2I0MSD9	FCF1 rRNA-processing protein.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.457
FCF1	MRPS7	A0A2I0MPA6	A0A2I0M7A5	FCF1 rRNA-processing protein.	Mitochondrial ribosomal protein S7.	0.851
GOPC	ABCC4	A0A2I0MVD5	A0A2I0MSD9	Golgi-associated PDZ and coiled-coil motif containing.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.456
KATNAL2	ABCC4	A0A2I0M0J5	A0A2I0MSD9	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.520
KIRREL	ABCC4	A0A2I0LJF9	A0A2I0MSD9	Kin of IRRE-like protein 1.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.434
KIRREL3	ABCC4	A0A2I0LVE3	A0A2I0MSD9	Uncharacterized protein.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.434
MRPS7	ABCC4	A0A2I0M7A5	A0A2I0MSD9	Mitochondrial ribosomal protein S7.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.550
MRPS7	FCF1	A0A2I0M7A5	A0A2I0MPA6	Mitochondrial ribosomal protein S7.	FCF1 rRNA-processing protein.	0.851
NICN1	ABCC4	A0A2I0LW75	A0A2I0MSD9	Nicolin 1.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.457
RAPGEF4	ABCC4	A0A2I0MIZ1	A0A2I0MSD9	Rap guanine nucleotide exchange factor (GEF) 4, transcript variant X1.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.435