STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECHDC1Ethylmalonyl-CoA decarboxylase 1, transcript variant X1; Belongs to the enoyl-CoA hydratase/isomerase family. (300 aa)    
Predicted Functional Partners:
ACOX1
Acyl-CoA oxidase 1, palmitoyl.
  
 0.968
ACOX3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.968
ACAA1
Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.960
ACAA2
Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.958
HADHB
LOW QUALITY PROTEIN: trifunctional enzyme subunit beta, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.956
PCCB
Propionyl CoA carboxylase, beta polypeptide.
  
 
 0.952
ALDH6A1
Aldehyde dehydrogenase 6 family, member A1.
   
 0.944
HADH
Hydroxyacyl-CoA dehydrogenase.
  
 0.943
ACSS1
Acetyl-coenzyme A synthetase.
  
 
 0.940
ACSS3
Acyl-CoA synthetase short-chain family member 3.
  
 
 0.940
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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