STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCH6Membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase. (903 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex, subunit 2, transcript variant X1.
    
 
 0.900
UBE2G2
Ubiquitin-conjugating enzyme E2G 2, transcript variant X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.788
UBE2J2
Ubiquitin-conjugating enzyme E2, J2.
    
 
 0.757
SYVN1
E3 ubiquitin-protein ligase synoviolin.
    
 
 0.746
AMFR
Autocrine motility factor receptor, E3 ubiquitin protein ligase.
    
 
 0.746
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.727
SPATA5L1
Spermatogenesis associated 5-like 1; Belongs to the AAA ATPase family.
    
 
 0.727
SPATA5
Spermatogenesis associated 5.
    
 
 0.727
FAM132A
Family with sequence similarity 132, member A.
    
 
 0.722
ERLEC1
Endoplasmic reticulum lectin 1.
   
 
 0.704
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.