STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH18Cadherin 18, type 2, transcript variant X1; Cadherins are calcium-dependent cell adhesion proteins. (794 aa)    
Predicted Functional Partners:
CTNNB1
Catenin (Cadherin-associated protein), beta 1, 88kDa.
    
 0.680
JUP
Junction plakoglobin.
    
 0.645
CDH12
Cadherin 12, type 2 (N-cadherin 2); Cadherins are calcium-dependent cell adhesion proteins.
     
0.536
A306_00014610
Catenin delta-1-like.
   
 0.522
A306_00014611
Catenin delta-1-like.
   
 0.522
ARVCF
Armadillo repeat gene deleted in velocardiofacial syndrome, transcript variant X1.
   
 0.522
TMEM215
Transmembrane protein 215.
   
    0.509
CDH17
Cadherin 17, LI cadherin (Liver-intestine).
     
0.509
CDH13
Cadherin 13, transcript variant X1.
     
0.502
A306_00000014
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
   
0.466
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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