STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLRN1Clarin-1. (232 aa)    
Predicted Functional Partners:
USH1G
Usher syndrome 1G (Autosomal recessive).
      
 0.630
USH1C
Usher syndrome 1C, transcript variant X1.
      
 0.626
USH2A
Usher syndrome 2A (Autosomal recessive, mild).
      
 0.548
A306_00000212
PDZ domain-containing protein.
      
 0.547
DFNB31
Deafness, autosomal recessive 31.
      
 0.543
CIB2
Calcium and integrin binding family member 2, transcript variant X1.
      
 0.535
ADGRV1
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
      
 0.528
PCDH15
Protocadherin-related 15, transcript variant X1.
      
 0.467
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.