STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXC8Homeobox protein Hox-C8. (242 aa)    
Predicted Functional Partners:
PBX4
Pre-B-cell leukemia homeobox 4.
    
 0.610
PBX3
Pre-B-cell leukemia homeobox 3.
    
 0.610
PBX1
Pre-B-cell leukemia homeobox 1, transcript variant X1.
    
 0.610
EPHB2
EPH receptor B2, transcript variant X6.
    
 
 0.499
LARP4
La ribonucleoprotein domain family, member 4.
      
 0.497
HOXB6
Homeobox protein Hox-B6.
   
 
0.490
HOXC9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
0.490
PITX1
Homeobox protein.
    
 
 0.456
TBX5
T-box 5, transcript variant X1.
    
 
 0.455
HOXB7
Homeobox protein Hox-B7.
   
 
0.453
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.