STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ72977.1Hydroxyacylglutathione hydrolase. (327 aa)    
Predicted Functional Partners:
SDZ72990.1
Two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ.
       0.737
SEA53401.1
Hypothetical protein.
  
     0.671
SEA21048.1
Acyl transferase domain-containing protein.
   
 0.552
SEA23664.1
Sulfide:quinone oxidoreductase.
    
  0.475
SDZ73527.1
Uncharacterized conserved protein, heparinase superfamily.
  
     0.464
SEA29754.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
  0.452
SEA59030.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
  
 
  0.452
SEA23313.1
Large terminase phage packaging protein.
  
     0.451
SEA78030.1
2,4-dienoyl-CoA reductase.
  
 
  0.439
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.