STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ75555.1Astacin (Peptidase family M12A). (268 aa)    
Predicted Functional Partners:
SEB03370.1
HD domain-containing protein.
  
     0.678
SEA31939.1
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase.
  
     0.653
clpP
ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
     0.650
SEA95188.1
Protein of unknown function.
  
     0.621
SEA09571.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.574
SDZ80835.1
Pyroglutamyl-peptidase; Belongs to the peptidase C15 family.
  
     0.573
SEA64142.1
Predicted dehydrogenase.
  
     0.523
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.511
SEA13059.1
Phosphotriesterase-related protein.
  
     0.499
SEA98660.1
Hypothetical protein; Belongs to the UPF0434 family.
  
     0.497
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.