STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ73097.1Flp pilus assembly protein TadD, contains TPR repeats. (569 aa)    
Predicted Functional Partners:
SEA91690.1
PAS domain S-box-containing protein.
    
 0.842
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.841
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.637
SDZ73116.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
       0.625
SDZ72912.1
Tetratricopeptide repeat-containing protein.
  
   0.608
SDZ80328.1
Lipopolysaccharide export system permease protein.
  
     0.525
SEA77948.1
Tetratricopeptide repeat-containing protein.
  
   0.516
SEA15365.1
Sensor domain CHASE2-containing protein.
    
  0.499
SEA20148.1
Adenylate/guanylate cyclase.
    
  0.499
SEA46883.1
HemY protein.
  
     0.499
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.